7 Best Practices To Master Nonprofit Financial Management

Reviewed by:

Published:

April 24, 2024

Last Updated:

April 24, 2024

Just because you work at a nonprofit doesn’t mean financial management isn’t important.

In fact, if you want to keep serving your community and enacting positive change, maintaining strong financial health is critical.

In this article, we are going to share seven best practices for managing your nonprofit’s finances. We’ll walk you through tangible tips, expert insights, and tried and true strategies to help keep your organization from making costly mistakes.

Let’s get started.

What Makes Nonprofit Financial Management Unique?

While it’s true that you’re not in the business of making a profit, financial management is just as important for nonprofits as it is for organizations in the for-profit sector.

It would be impossible to fulfill your mission if you didn’t have the funds to do so—and that starts with a strong and healthy financial base.


Here are a few things that make nonprofit financial management unique:

  • Income: Because nonprofits rely on fundraising to operate, there are a lot of different income streams to keep track of, such as individual donations, grants, sponsorships, membership fees, and more.
  • Compliance: There are also a lot of compliance and reporting requirements that nonprofits have to adhere to so that they can maintain their funding as well as their tax-exempt status.
  • Transparency: And unlike the for-profit sector, nonprofits have to demonstrate incredible accountability and transparency for how they are allocating their funds to make an impact.

There’s a lot that goes into nonprofit financial management, which is why we’re here to share some top best practices with you. Keep reading!

7 Best Practices for Nonprofit Financial Management

The following seven steps should give you a solid plan to manage your nonprofit’s finances effectively so that you can keep advancing your mission for years to come.

1. Engage in Long-Term Planning

One of the most fundamental parts of nonprofit financial management is long-term planning.

Laying out your major financial goals and objectives you hope to achieve over the next three to five years will provide your team with a clear roadmap for financial success.


We understand that taking the time to strategize financial plans over the long term can be challenging. Afterall, there are probably plenty of pressing things in your day-to-day operations that will try to take priority. But we promise that engaging in long-term planning will help set your nonprofit up for success and sustainability.

Here are some tips for how to develop an effective long-term financial plan for your nonprofit:

  • Include all departments in long-term financial planning: All department heads should participate in developing the plan to ensure any proposed budgets are actually able to support the organization’s activities and goals.
  • Use the past to develop the future: You can review past spending to assume future financial needs.
  • Review and discuss with your board members: Financial planning is a team effort, so you should present your plan to your board and seek their feedback before adopting it.
  • Review at least twice a year: Finances and priorities change; therefore, your team should review your long-term plan throughout the year—we recommend at least bi-annually. That way, you can take note of any major changes in funding or multi-year contracts that might be ending soon.

Your long-term financial plan should provide a roadmap for growth by setting clear objectives, identifying resources, and aligning everyone’s efforts to the overarching mission.

This planning also shows your donors, partners, and grant funders that your nonprofit has carefully planned out its goals and how to achieve them.

If you’re not sure where to start, check out this helpful Financial Management Self-Assessment Tool from the Nonprofit Association of Oregon. You should be able to use it to identify gaps in your plan and what things need to be prioritized.

2. Have Policies and Procedures in Order

It is important that your nonprofit has clear, documented policies and procedures that reflect strong internal controls.

Here’s a great quote from Propel Nonprofits on why financial policies are so important:

“Financial policies clarify the roles, authority, and responsibilities for essential financial management activities and decisions. In the absence of an adopted policy, staff and Board members are likely to operate under a set of assumptions that may or may not be accurate and productive."


What kinds of policies you should have in place will depend on your specific organization. However, here’s a list of some of the most commonly needed ones:

  • Reimbursements
  • Gift reconciliation
  • How to code different gifts
  • Record keeping for grant reports
  • Travel expenses
  • Cash management
  • Grant spending
  • Gifts and donations
  • Investment of assets
  • Budget reconciliation
  • Procurements
  • Time and effort reporting
  • Conflicts of interest
  • Data management
  • Whistleblower policies
  • Nondiscrimination practices
  • Document retention
  • Confidentiality

Ultimately, it’s important to have policies and procedures that outline who on your team has the authority to make regular financial decisions and how.

If your organization is new, you might need to develop these policies from scratch. More established nonprofits should regularly review and reassess what they already have documented to identify if any changes need to be made.

Pro Tip: Your team may also want to review a series of practices and controls issued by the Financial Accounting Standards Board (FASB) and the Government Accounting Standards Board (GASB), known as the General Accepted Accounting Principles (GAAP). Abiding by GAAP ensures an organization is following appropriate policies, rules, and regulations and that financial reports are accurate and consistent.

3. Invest in Proper Software

There are many tools and solutions out there that can make managing your organization’s finances more streamlined and effective.

For example, your nonprofit could consider investing in:

Some smaller nonprofits might only have a few funders and donors, so using tools like Excel or Google Sheets might work for a time. However, as your organization grows, investing in proper software that’s designed specifically for financial management will be necessary.

For example, Instrumentl’s grant management software streamlines the entire grant lifecycle from start to finish. Within it, you can:

  • Track your grants
  • Manage them by deadline
  • Store your documents
  • Assign tasks
  • Track your awards
  • Create reports
  • Collaborate with your team
  • And so much more


Instead of manually inputting information into an Excel spreadsheet and then having to update it regularly, Instrumentl organizes all of your grants-related information for you and then keeps it synched in real time.

If you’re not currently an Instrumentl user, you can sign up for a 14-day trial.

4. Master Budgeting

Budgeting can be one of the most difficult challenges you face as a nonprofit professional.

For years, there’s been a misconception in the nonprofit industry that nonprofits should operate with a “zero-based budget” since they aren’t out to make a profit. However, this couldn’t be further from the truth.

As Kate Barr from the Nonprofit Financial Commons explains:

“We’ve unfortunately been conditioned with a nonprofit starvation or need-based mindset…That is why it’s doubly important to start changing that narrative, and that starts with how you communicate the (very justifiable) reasons for why your budget does not come out to zero. A surplus builds the flex and freedom to be more creative and responsive in your programming.”


In order to plan effectively, your organization needs to have a budget in place that carefully captures your incoming revenue and outgoing expenses.

Here are some tips to keep in mind when developing your budget:

  • Budgets Aren't Just for the Finance Department: It’s important to consult with executive leadership along with department heads to make sure your budget is the right size.
  • Invest in Budgeting Basics: Make sure your non-finance staff know budgeting basics so they can do their part in tracking their own department budgets.
  • Start Early: Starting the budget creation process early can prevent bigger financial challenges in the future. Begin by having initial meetings with department heads and make a collaborative work plan about three to four months before your next fiscal year.


This collaborative planning can give nuanced insight into how your different departments spend their budgets and what their financial needs are. This information can also inform fundraising goals and priorities in the future.

As Don Needs from the Jitasa Group explains,

“As you start thinking through your budgeting, you definitely want to involve all key stakeholders within the process. So, that includes not only your board members, but other folks on your team in different departments to make sure everybody kind of has a say in a collective input on the direction of where your organization is going.”


Remember that your board also needs to approve the budget, so starting early will also ensure they have time to make any necessary changes.

Here are some helpful nonprofit budgeting resources you can check out as well:

5. Keep Track of Statements and Reports

An organized accounting system is essential to running a successful nonprofit organization and adhering to best practices in nonprofit financial management.

This means keeping detailed track of:

  • Balance sheets
  • Cash flow statements
  • Grant and department budgets
  • Expense tracking
  • Timesheets and pay stubs
  • Reconciliation and reporting
  • Audited financial statements
  • Articles of incorporation
  • IRS determination letter and any correspondence related
  • 990 reports
  • Current and past organizational budget
  • Budget actuals
  • Updated business licenses or similar paperwork (typically needed for government grants)
  • Tax returns

You should keep both physical copies of these records and digital copies using cloud-based storage applications. With cloud-based access, teams can collaborate seamlessly and easily pull reports when needed.

Pro Tip: With digital storage, make sure you have a back-up plan. This could include having your files synced to a separate file server so that if your files accidentally get deleted you can restore them with ease.

Arnold King, Senior Grant Writer at Black Women in Blockchain shared this with us when asked what top signs indicate that a nonprofit is grant ready and competitive:

“First of all, their finances have to be in the best shape possible. Funders look at financial statements first. If a grantor finds their finances are in the best shape possible and it fits what they're looking for, the funder will go further.”


Although financial statements are not always requested from a funder, you never want to find yourself in a situation where you can’t find the reports you need.

Having organized statements and reports allows you to easily demonstrate your financial responsibility to your nonprofit’s key stakeholders. You should also consider creating a policy on how and where you will track your statements and reports to ensure you are in compliance with any federal, state, or local documentation requirements.

6. Reconcile Gifts on a Regular Basis

Nonprofits rely on donations to survive, and these gifts come in all shapes and sizes.

From a one-time physical check to a recurring gift to an in-kind donation, reconciling gifts as soon as possible will ensure the funds are earmarked and allocated properly.

For example, planned gifts allow donors to make their charitable gift through an estate plan, trust, or will. This means the donor will stipulate how their assets are distributed to the nonprofit organization upon his or her death. These are usually larger donations, but the setup can be complicated and may require outside consultation.

You will want to also reconcile restricted versus unrestricted gifts. Restricted gifts have specific instructions as to how the funds should be used, while unrestricted gifts are made without any specific conditions or stipulations.

7. Plan for Audits Accordingly

Planning for regular audits will ensure your nonprofit is both efficient in its spending and compliant with any grant funding or 501(c)3 requirements.


Whether it is an internal audit or an audit from a government funding agency, you should prepare for them at least four to eight weeks in advance by gathering the following:

  • Tax documents
  • Bank accounts and statements
  • Receipts
  • Canceled checks
  • Books and digital records
  • Travel expenses

Review the IRS’s guides for nonprofits for more information on federal requirements.

You can better prepare for external audits by conducting your own audits internally. These audits usually fall into two different categories:

  • Financial audits focus on the accuracy and completeness of your financial statements for tax purposes or to meet requirements for certain grants.
  • Operational audits assess your organization’s operation systems, productivity, staffing, IT, HR, and other functions to ensure your nonprofit is either meeting or missing its goals.

To conduct internal audits you can take the following steps:

  1. Find an independent auditor based on the types of services they offer, the timeline based on your needs, and their fees.
  2. Once you find your auditor, you should require them to provide an engagement letter that outlines the terms of the audit (i.e., cost, timeline, services).
  3. You are in charge of compiling the documents listed above, not the auditor. This includes reviewing and double-checking all statements and records for any errors.
  4. Make any changes or improvements that result from the auditor’s findings.

If you are working with federal, state, or local government agencies, they may have separate compliance audits to ensure your nonprofit organization is adhering to their specific regulations and requirements.

Planning regular audits not only ensures your organization’s compliance, but also supports continuous improvement in your operations and mission fulfillment. Nonprofits may consider hiring a certified public accountant (CPA) or an audit firm experienced in nonprofit compliance to complete these tasks.

Find Your Next Grant

17K Live Grants on Instrumentl

150+ Grants Added Weekly

+3k NonprofitsNew matchesTry Instrumentl free for 14 days

Master Financial Management and Stay Compliant

Effective financial management is crucial for the success and sustainability of your organization. These top seven best practices should help your nonprofit stay in compliance and run smoothly now and in the future.

And if you haven’t already, make sure to sign up for a 14-day free trial of Instrumentl to easily track your grants, organize your budgets, and manage your reporting deadlines.

Want to get better at grants?

Join 10K+ grant pros already receiving our 5-minute free newsletter, packed with grant strategies, networking events and new funding opportunities.

Get access to weekly advice and grant writing templates

Thank you! Your submission has been received!
Oops! Something went wrong while submitting the form.

10k+ grant writers have already subscribed

Stephanie Paul Morrow

Stephanie Paul Morrow

Stephanie Morrows holds a Ph.D. in Media and Communications and is a professor at PennState Harrisburg.

Become a Stronger Grant Writer in Just 5 Minutes

Thank you! Your submission has been received!
Oops! Something went wrong while submitting the form.

17,502 Open Grants Waiting For You

Find grant opportunities to grow your nonprofit

Try 14 days free

10 Ready-to-Use Cold Email Templates That Break The Ice With Funders

Transform funder connections with our 10 expert-crafted cold email templates. Engage, build bonds, showcase impact, and elevate conversations effortlessly.

Read Ebook
How to save up to 15 hours per week with smarter grant tracking

How to Save Up to 15 Hours per Week with Smarter Grant Tracking

Watch Now
Arrow right

Related posts

Try Instrumentl

The best tool for finding & organizing grants

128 reviews | High Performer status on g2.com

Try free for 14 days